rs30086254 SNP Detail

Summary

• ID
  rs30086254
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:124195378 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GTCACCGACG CGACAGATGT GGGGTGGAGT CGGGCGAATC CCGGAAGAAC GTGCGGCGTA
  TAACCTCAGT CGGCCGTGGG TTCCACGAGA GGCTGCGTTC CGGGTGATGG CGACACGGGT
  TACGCGACAA CGGAAGGGGC GTGGTTGCAT CCGCAAACGC TCGGCAGTCA CGGTTTCAAA
  ATAAAAAATG GAAAAAAAAA AAAAATCCTT GGCCCGGGCG CAGGCTGATG GCATCAGCAA
  GTCAGGTCGC CGCGTGGAGG CCGTGCGCGC ATGCGCAGTG ACTTCCCCCG GCCACGGGCT
  S
  GCATGCGCTG GGGGTGTGCG CCGGCTTGGG GTCCCGATGC GTATGCGCGT TGGGTTTCTG
  TTGCAGGCAG CGCACATGCG CATTGCGTTT ACTTCCAAGT TGGCTGCACA TGCGTGTCGC
  AGAAGTGCGG GTCTGGCGAG TACAAAGAAG CCTGGCTTCG CGCATGCGTA TCGTGACGTA
  TGACAGCGAG TATGGCCTGG TGCCATCAGT CATCCTGGAA GCTCCGCTCA CTTTTAAAAA
  ATAATCTCAT TGGTGCCTAA TTGTCATTTA TTTACTTATC ATTTGCATAT TCATGAATCT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46371168	mCV24427036	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss134041025	ENSMUSSNP3126158	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30086254					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:124195378 () rs orientation: forward

Symbol	Name	Function Class
4930526I15Rik	RIKEN cDNA 4930526I15 gene	within coordinates
Ppp2r3d	protein phosphatase 2 (formerly 2A), regulatory subunit B'', delta	34 bp upstream
Tssr3090	transcription start site region 3090	1824 bp upstream
Tssr3091	transcription start site region 3091	1341 bp downstream
Tssr3092	transcription start site region 3092	1313 bp downstream
Tssr3093	transcription start site region 3093	1293 bp downstream
Tssr3094	transcription start site region 3094	1241 bp upstream
Tssr3095	transcription start site region 3095	1040 bp upstream
Tssr3096	transcription start site region 3096	960 bp upstream
Tssr3097	transcription start site region 3097	884 bp upstream
Tssr3098	transcription start site region 3098	533 bp upstream
Tssr3099	transcription start site region 3099	430 bp upstream
Tssr3100	transcription start site region 3100	405 bp upstream
Tssr3101	transcription start site region 3101	293 bp upstream
Tssr3102	transcription start site region 3102	150 bp upstream
Tssr3103	transcription start site region 3103	108 bp upstream
Tssr3104	transcription start site region 3104	16 bp upstream
Tssr3105	transcription start site region 3105	23 bp downstream