rs30086265 SNP Detail

Summary

• ID
  rs30086265
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115574121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTAAATTAC TTTCGCCACT
  TAAAAAAAAA ATTGAAATTG GTGGCTTTCC CCAAGCGGAG CATTAGTAGC ATCAAATTAG
  AGGAAGAAGC GTGGGGGGGG GGGCTGAGTG AAGGGGTTTG ATGGGCAACT TTAAGGAATG
  CATTTTGATT TTTAGATTCT TTTCAAGCAG TACAGTTTGC TTTAGCAATG CTTTTGTACA
  K
  CTATGGGCTT GAATCCTAAT GCAAGAAATG TTAAGCCTAC GACTGCTTGT CATTTTTAAA
  AAAATATTGA TGCTGAGACT CAAACCCAGG ACCACATACA CGCTAAGTAC ATGCTCTAGT
  AAGCTACATT CTTGGCGTAA CATAACACAC TTTAACATAA AGCAGCGGTT CACAGATGCT
  GGGAATGTGA ACTTTGAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46913376	NES10691043	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30086265					SNP	G	G	G	G	G	G	G	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913376	NES10691043	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115574121 () rs orientation: forward

Symbol	Name	Function Class
Rr583598	regulatory region 583598	1200 bp distal