rs30086550 SNP Detail

Summary

• ID
  rs30086550
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37728291 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCATGTCCC ATATGTTGTC
  AGAGAAGCCT TCCTGGGAGA GAACATGACA CACTCTGCTT TCAGTACCTC CTATCCCAAA
  GCTACATAGA CTGTGGCAGG ACATTGAGCA TGGCCCCGGG CGCTTTGAAA ATGTGAGTGA
  CTGCATTTGA CCAGAAGACA CGTTGTCAAG GCAACCTGTG ACAAAGCATC CTCGTGGAGC
  W
  TGGCTGGGTA CAGCAGGCAG GATCAGAGGG GTTAGTGAGC TCTGGCTCGC GGCTGGACTA
  TGACTGTGAG TTCCAGATTT TTGTCCTTCA GGTTTCAAGA GTCAAATGAA ACTGGGCAGG
  GTAGAGATAT TATCCAGAAA ATCTTGCTTC CTGGAAATGC GCGGGGCAGT TTGGGTGGGG
  TAGCTGGGTG GAGATTCCTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45474241	mCV22777440	ABI	CRAMUS_MOUSE	f	SNP	T	T	A					A
ss46913183	NES10828074	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	T	A		A	A	A	A	A	T	T	A	A
ss134810688	ENSMUSSNP1664361	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30086550					SNP	T	T	A	A	A	T	A	A	A	A	A	A	A	T	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913183	NES10828074	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37728291 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	within coordinates
Rr406863	regulatory region 406863	66 bp distal
Rr575537	regulatory region 575537	692 bp distal
Rr575538	regulatory region 575538	within coordinates
Rr575539	regulatory region 575539	833 bp proximal
Tssr33054	transcription start site region 33054	1717 bp upstream