rs30086999 SNP Detail

Summary

• ID
  rs30086999
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51305277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGTAGAG CAGGCGAGGC
  CAGCTGTTTT CAGGAGCCAG GGCTACACAG AGAAACCCCG TCTCAAGAAA CCAGGATCCC
  TGCCCCCTGC CTCCGCAGTG TTGAGATTAA AGGCATAGGC CACTACCACC ACCACCACAG
  AGCGTTGTGA GTCTTGTAGA CCCGAGTAAA GCGACTGAGG AAAGCTCTGA AGCATAGTCG
  R
  TGCGTGATGT ATGCTCAGCC CGATGGAAGA GTCAGTGCCG GGTCACGATT TCTCTGCTCC
  TTTCAGTCTG GTAAGTGAAC ATAGTTGCAT CTGTATGCCC GCCCCAGCTG GGAGAGATGG
  TATGTCTACA CTGTGAGCTT CAGACCTACT CTCTGGGTTC TTTTCATATT TTAAAGAGCC
  GTTTCCCAAA CAAACACCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598235	NES12918265	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30086999					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598235	NES12918265	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51305277 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	928 bp distal
Gm64559	predicted gene, 64559	1672 bp downstream
Mgarp	mitochondria localized glutamic acid rich protein	1309 bp upstream
Rr576308	regulatory region 576308	628 bp distal
Tssr33206	transcription start site region 33206	1330 bp upstream
Tssr33207	transcription start site region 33207	1305 bp upstream
Tssr33208	transcription start site region 33208	1099 bp upstream