rs30087001 SNP Detail

Summary

• ID
  rs30087001
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51304375 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGCTGTTAC GTGCCTGACC
  CGCTCTGTCC CATGGAGTTA TCTCCCGAGC ACGCAGGACA CGTTTAGAGA AGCGCGCTTG
  ATTCAGGATT CATGCGCAGA CGGAATGTAT TCTCCAGGTG GAAGACCACT TTATTCCACA
  CACTGTGTTA GCATTCCCAG GAAGAGGTAG CGGGAAACTT AAGAGACGAC TTTACAGGCT
  Y
  ATGATTAAAG GAAGGGTAAG GTTTCCCCCT GGCGATGGCT GAGTTCTAAG CCAGCCAGGA
  CTTTTAAATA TAGGGTAAAG AGTTTATCTA GCATGGGTTC GATACCCAAC AGCGCATAAA
  ACCAGACATG GTGGCGCAAG AAGTTACTCC CAGCACTCAG AGGGGGAGGT AGGATGCTCA
  GGAGTTCAAG ATCTTTGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598237	NES12918296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30087001					SNP	T	T	T	T	T	C	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598237	NES12918296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51304375 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	26 bp distal
Mgarp	mitochondria localized glutamic acid rich protein	407 bp upstream
Rr576308	regulatory region 576308	within coordinates
Tssr33206	transcription start site region 33206	428 bp upstream
Tssr33207	transcription start site region 33207	403 bp upstream
Tssr33208	transcription start site region 33208	197 bp upstream