rs30087002 SNP Detail

Summary

• ID
  rs30087002
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51304276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTTGGTCC CCTTACCCAG
  CTCTAATAGA GTTGCAGTCC CGTGCTCCCC AGCAGTCGCT TAATGGCTGC ATCTCAGAAG
  AGGCTAGGGA GCTTAGAAGT CGCTGTTACG TGCCTGACCC GCTCTGTCCC ATGGAGTTAT
  CTCCCGAGCA CGCAGGACAC GTTTAGAGAA GCGCGCTTGA TTCAGGATTC ATGCGCAGAC
  R
  GAATGTATTC TCCAGGTGGA AGACCACTTT ATTCCACACA CTGTGTTAGC ATTCCCAGGA
  AGAGGTAGCG GGAAACTTAA GAGACGACTT TACAGGCTTA TGATTAAAGG AAGGGTAAGG
  TTTCCCCCTG GCGATGGCTG AGTTCTAAGC CAGCCAGGAC TTTTAAATAT AGGGTAAAGA
  GTTTATCTAG CATGGGTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598238	NES12918295	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30087002					SNP	G	G	G	G	G	G	A	G	G	G	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598238	NES12918295	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51304276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	within coordinates
Mgarp	mitochondria localized glutamic acid rich protein	308 bp upstream
Rr576308	regulatory region 576308	within coordinates
Tssr33205	transcription start site region 33205	1954 bp upstream
Tssr33206	transcription start site region 33206	329 bp upstream
Tssr33207	transcription start site region 33207	304 bp upstream
Tssr33208	transcription start site region 33208	98 bp upstream