rs30087187 SNP Detail

Summary

• ID
  rs30087187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115574760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTCTAATG ATATCTGGCA
  GGGAAATCCA TGTGGCCATA TGACTGTGGC CAACCACTAT CCTTTGATGA CCCTGTGCCA
  CGCTCCATTA CAAACCTCGT GGCACAACAA AATATCTCCC AATACCACTT AGAAATATGC
  CTGTTGGTAT ACGTCACACA CAAACATATT GCTGCTTCTA CTGGATATCT CTTGGGAAGA
  Y
  ATTCGCCATT CCAGACCTAT TAAGTGGATG AAGAAAGATC AGAGTGTTAG AATTCCCAGA
  AGAATTCTTT CTCATCTCCA GCAGTTTCTT TGCTAGAATA AAGAGCTCAC TAGGCCGTTA
  TTGTCTAGAA AATATAACTT CCTAACAGCT GCTCTATGGT ATTGATAGAA AGGCTTTATG
  ACATTGGCAT CACCTAGGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46913388	NES10690925	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30087187					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913388	NES10690925	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115574760 () rs orientation: forward

Symbol	Name	Function Class
Rr583598	regulatory region 583598	1839 bp distal