rs30087193 SNP Detail

Summary

• ID
  rs30087193
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115574900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTGGTAT ACGTCACACA
  CAAACATATT GCTGCTTCTA CTGGATATCT CTTGGGAAGA TATTCGCCAT TCCAGACCTA
  TTAAGTGGAT GAAGAAAGAT CAGAGTGTTA GAATTCCCAG AAGAATTCTT TCTCATCTCC
  AGCAGTTTCT TTGCTAGAAT AAAGAGCTCA CTAGGCCGTT ATTGTCTAGA AAATATAACT
  Y
  CCTAACAGCT GCTCTATGGT ATTGATAGAA AGGCTTTATG ACATTGGCAT CACCTAGGGA
  TAAAGTCCAG GCCTGCATGG GTTGGATATC TTTGCAGTTT GAGAGCTGGC ATGCTTGTTG
  ACATTGCCCC CTGAGAAGCT AAGGCACAAA TGAGCCAAGG CTGTGTTCAC ACAGTTGGAA
  CTGGCAATGC CAGGCCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913394	NES10690928	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T		T	T	C		C
ss320893286	CHEV_3_115484169	CHEVERUD	SCREENING_POP	f	SNP										T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30087193					SNP	T	T	T	T	T	T	C	T	T	T	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913394	NES10690928	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115574900 () rs orientation: forward

Symbol	Name	Function Class
Rr583598	regulatory region 583598	1979 bp distal