rs30087669 SNP Detail

Summary

• ID
  rs30087669
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:50407575 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGCAGGCCC CTGATTGTAA GATGGCACAG CAGGAGACAG
  ACAGGGCCTG CTGCTGAAAT GAGAAAAAGA GAAGTCTACT AGGGAGAGAT AAGATGAAGA
  Y
  GTGGGAGCCT TTCTGAAAGG AGGGAGACAA GAAGGAGAAA ACACAAGACA ATGGGGGGAG
  GTGGGGGAAG GGCAACCGCA AAAGTCCCAG TAGCCTCGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46371662	mCV24342332	ABI	CRAMUS_MOUSE	f	SNP		C						T		C
ss47706266	NES11306312	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	C		C	C	T	T		C	C	T	T		C
ss136476445	ENSMUSSNP4409796	ENSEMBL	ENSEMBL_Sanger	f	SNP		C								C
ss322959634	CHEV_9_50304380	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30087669					SNP	C	C	C	T	C	C	C	T	C	C	T	T	C	C	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47706266	NES11306312	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50407575 () rs orientation: forward

Symbol	Name	Function Class
Plet1	placenta expressed transcript 1	within coordinates
Plet1os	placenta expressed transcript 1, opposite strand	within coordinates
Tssr85025	transcription start site region 85025	1742 bp downstream
Tssr85026	transcription start site region 85026	501 bp upstream