rs30087869 SNP Detail

Summary

• ID
  rs30087869
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51303246 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGATTTCC ACAGGCGTTT
  TTCTGTCTTT CTCAGTCAAA TCTTTGCTTT GGATGCTGCC TCCGATGCCC CAAGGAGTGG
  GGCAAAGTAC AGAATAATTA ACTTTCTAGT GTCCAAGATC TGTGCCCCAG TGAGTGATGA
  ACAGAGAGGG TGGGCAGCTA GGAGAGGACC TGCAAACCAG CCCAAAGCCT GTAAGCTCTT
  W
  TAGTCCAGGA TGCTGCTTCT TTAGAAAATT TCCAAGAGCG CATTTCCTCA CGCATTCCCT
  AATCCGAAGC TGACGGAGCT GCAAGCTTGT CAGCAACATC AGAAGAGTAC CCCGAGGCCT
  CACTTCGAAG GGATGATCAG GGCCACAAGA AGCCGGGGGT TTATCACCGC CAGGGATCAG
  TGAACCGACA CTTCTTCTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598245	NES12918288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30087869					SNP	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598245	NES12918288	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51303246 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	512 bp proximal
Mgarp	mitochondria localized glutamic acid rich protein	within coordinates
Rr576308	regulatory region 576308	691 bp proximal
Tssr33205	transcription start site region 33205	924 bp upstream
Tssr33206	transcription start site region 33206	678 bp downstream
Tssr33207	transcription start site region 33207	703 bp downstream
Tssr33208	transcription start site region 33208	891 bp downstream