rs30087873 SNP Detail

Summary

• ID
  rs30087873
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51302524 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCA GCCAAGCCTC AAGACCTAGT
  Y
  CAGTTTCTGG TACCCACTGC CTCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49598249	NES12918318	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	C	T	C		T	T	T	T		C
ss135173202	ENSMUSSNP3647424	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
ss320762638	CHEV_3_51199025	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30087873					SNP	C	C	T	C	C	T	C	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598249	NES12918318	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51302524 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13137	CpG island 13137	1234 bp proximal
Mgarp	mitochondria localized glutamic acid rich protein	within coordinates
Rr576308	regulatory region 576308	1413 bp proximal
Tssr33205	transcription start site region 33205	202 bp upstream
Tssr33206	transcription start site region 33206	1400 bp downstream
Tssr33207	transcription start site region 33207	1425 bp downstream
Tssr33208	transcription start site region 33208	1613 bp downstream