rs30089127 SNP Detail

Summary

• ID
  rs30089127
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37739810 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CTTCCATAAA ATGCCACCTT
  M
  GGGCATACCT GGCCACCAGT GAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
ss46913408	NES10827206	PERLEGEN	MM_PANEL2	f	SNP		C	C	A	C	C	A	A		A		C
ss134811041	ENSMUSSNP6881654	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C				C
ss320711751	CHEV_3_37584583	CHEVERUD	SCREENING_POP	f	SNP									C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	SM/J	WSB/EiJ
rs30089127					SNP	C	C	C	A	C	C	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913408	NES10827206	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37739810 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	1371 bp downstream
Rr575540	regulatory region 575540	1118 bp proximal
Rr575541	regulatory region 575541	1489 bp proximal
Rr575542	regulatory region 575542	1591 bp proximal