rs30089130 SNP Detail

Summary

• ID
  rs30089130
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37739998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCTAGGGG AAAAAAAAAA AAAAAAAAAA AAAAAGCAGA
  CTCCTGGAGA CACAGTGTCT GTGTAGACTT CCAAATAAAA GCAGTAGGAA GCTTTTGGCT
  S
  GCTTCAGGAG CTGAGACGTG AGGATGAGAG CCACAAATGC CAGCTGAGGG GAAAACTGAC
  TATGTTGCTC AGAAGCTGGG GACATGCCAC CTCTACCAT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss46913411	NES10827207	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	G	C	C		C	C		C
ss134811044	ENSMUSSNP5950292	ENSEMBL	ENSEMBL_Sanger	f	SNP	C					G
ss320711752	CHEV_3_37584771	CHEVERUD	SCREENING_POP	f	SNP									G			G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs30089130					SNP	C	G	C	C	C	G	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913411	NES10827207	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37739998 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	1183 bp downstream
Rr575540	regulatory region 575540	930 bp proximal
Rr575541	regulatory region 575541	1301 bp proximal
Rr575542	regulatory region 575542	1403 bp proximal
Rr575543	regulatory region 575543	1883 bp proximal