TGACT ATGTTGCTCA GAAGCTGGGG R CATGCCACCT CTACCATGAA GCGAG R = A/G Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
ss46913414 | NES10827209 | PERLEGEN | MM_PANEL2 | f | SNP | G | G | A | A | G | A | A | A | A | G | |||
ss134811047 | ENSMUSSNP7009252 | ENSEMBL | ENSEMBL_Sanger | f | SNP | G | G | |||||||||||
ss320711753 | CHEV_3_37584853 | CHEVERUD | SCREENING_POP | f | SNP | G | G | |||||||||||
SNP Consensus Information | ||||||||||||||||||
SNP | Consensus Type | A/J |
AKR/J |
BALB/cByJ |
BTBR T<+> Itpr3 |
C3H/HeJ |
DBA/2J |
FVB/NJ |
KK/HlJ |
LG/J |
MOLF/EiJ |
PWD/PhJ |
SM/J |
WSB/EiJ |
||||
rs30089133 | SNP | G | G | A | A | G | G | A | A | G | A | A | G | G |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type |
Alleles |
---|---|---|---|---|---|---|
ss46913414 | NES10827209 | PERLEGEN | MM_PANEL | f | SNP | A/G |
Location: Chr3:37740080 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Gm65174 | predicted gene, 65174 | 1101 bp downstream | ||||||
Rr575540 | regulatory region 575540 | 848 bp proximal | ||||||
Rr575541 | regulatory region 575541 | 1219 bp proximal | ||||||
Rr575542 | regulatory region 575542 | 1321 bp proximal | ||||||
Rr575543 | regulatory region 575543 | 1801 bp proximal |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 03/25/2025 MGI 6.24 |
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