rs30089456 SNP Detail

Summary

• ID
  rs30089456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51261358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAT CTCTTCAGCC CTCGAGATTT
  K
  TCCTGATGGA GTCTGGGGCA CAAAT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
ss45421020	mCV24462588	ABI	CRAMUS_MOUSE	f	SNP	T	T	G			G
ss49598455	NES12919468	PERLEGEN	MM_PANEL2	f	SNP			G	G	G		G	G		G	G		T
ss135172836	ENSMUSSNP7104474	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	G
ss320762379	CHEV_3_51157859	CHEVERUD	SCREENING_POP	f	SNP									G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	SM/J	WSB/EiJ
rs30089456					SNP	T	T	G	G	G	G	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598455	NES12919468	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51261358 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	within coordinates
Rr576283	regulatory region 576283	363 bp distal
Rr576284	regulatory region 576284	275 bp proximal
Rr576285	regulatory region 576285	1327 bp proximal