rs30089457 SNP Detail

Summary

• ID
  rs30089457
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51261044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA ATATTTTTTT AAAGTGGAAT
  S
  CTATCACTAT TTATTTATTT TTTAA                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49598456	NES12919469	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	G			G	G	G		C
ss135172825	ENSMUSSNP863178	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G				G
ss320762375	CHEV_3_51157545	CHEVERUD	SCREENING_POP	f	SNP							G				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30089457					SNP	C	G	G	G	G	G	G	G	G	G	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598456	NES12919469	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51261044 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	within coordinates
Rr576283	regulatory region 576283	49 bp distal
Rr576284	regulatory region 576284	589 bp proximal
Rr576285	regulatory region 576285	1641 bp proximal