rs30089458 SNP Detail

Summary

• ID
  rs30089458
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51259649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCAGAGCT GAGAGTTCTA
  TGTCTTCATC CAAAGGCTGC TAGTGGAAGA CTGACTTCCA GGCAACTAGG GTGAGAGTCT
  TAAACCCACA CCCACATTGA CACACCTATT CCAACCAGGT CACACCTCCA GATGATGCCA
  CTCCCTGGTC CAAGAATATA CAAACCATCA CACTAACCAA CACAAACCTA GGTACTTGAC
  R
  GACTCAAATG ACCACCTGTA CATGATGAAA TATGATCCTC CACATGAGTG CAAAAACATA
  AGCCTTACCT CGAAGGTGAT AACAAAAAAA AACCAACACA TTGTATTCTG CAGCCGTATA
  TGAATGAGCA TAGACATGGA ACACAGATTT AAGTTACCCC AAATTCTGTG TTTCAACATA
  GAAGCAGTTT CAAGAAGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49598458	NES12919515	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30089458					SNP	A	A	A	A	G	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598458	NES12919515	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51259649 () rs orientation: forward

Symbol	Name	Function Class
Rr576282	regulatory region 576282	1143 bp proximal
Rr576283	regulatory region 576283	1325 bp proximal
Rr576284	regulatory region 576284	1984 bp proximal