rs30089969 SNP Detail

Summary

• ID
  rs30089969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37740130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTG AGGGGTACAG GAGCATCAGC
  R
  AGCAGTGAGG ACCCCGTGCC CTCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46913420	NES10827213	PERLEGEN	MM_PANEL2	f	SNP		G	G	A	G	G	G	G	G	G	G	A
ss134811053	ENSMUSSNP2715567	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30089969					SNP	A	G	G	A	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913420	NES10827213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37740130 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	1051 bp downstream
Rr575540	regulatory region 575540	798 bp proximal
Rr575541	regulatory region 575541	1169 bp proximal
Rr575542	regulatory region 575542	1271 bp proximal
Rr575543	regulatory region 575543	1751 bp proximal