rs30089972 SNP Detail

Summary

• ID
  rs30089972
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37740139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTACA GGAGCATCAG CGAGCAGTGA
  R
  GACCCCGTGC CCTCGCTCAT AATTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
ss46913423	NES10827215	PERLEGEN	MM_PANEL2	f	SNP	A	A	G	A	A	A	G	G		G	G	G
ss134811056	ENSMUSSNP2591681	ENSEMBL	ENSEMBL_Sanger	f	SNP	A					A
ss320711755	CHEV_3_37584912	CHEVERUD	SCREENING_POP	f	SNP									A				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30089972					SNP	A	A	G	A	A	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913423	NES10827215	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37740139 () rs orientation: forward

Symbol	Name	Function Class
Gm65174	predicted gene, 65174	1042 bp downstream
Rr575540	regulatory region 575540	789 bp proximal
Rr575541	regulatory region 575541	1160 bp proximal
Rr575542	regulatory region 575542	1262 bp proximal
Rr575543	regulatory region 575543	1742 bp proximal