rs30090220 SNP Detail

Summary

• ID
  rs30090220
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37726042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTTAGTT CTTCAGTAAG
  AGAATTTTGC TTTCTCTATA TTAAAATTGA CTTAGCTTTT CCCCCTCCCA AGCAGGGCCT
  TTTCTTAGCC CAGGTTGGTT GGAGCTCATT CTGTAGCTCA AATTGGTTCC AAGCTCATGA
  TCTTTTTGCC TCCAGTCTTC CAAGTGCTGG GATTATGTGT GCCACCATGC CCAACCAACT
  R
  GACAAATTTT TTATAGTCAA TGCTCAAGAA CTTTAACAAT TTTGAATATA GAATATTGCT
  CTCATAAATT CTTAATGTTT TCAAATCAAC CTATAAGCAT ATATGCTGCT GTGATTTTTT
  TTTTCCATGA CTGTTTATTT AGGTCTCTGG AACATTTCTG CTTCCTTCTG GAATTCTTTA
  CATTAGAGGC AAACCTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45544242	mCV25406329	ABI	CRAMUS_MOUSE	f	SNP		G	A					A
ss46913123	NES10828257	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	A		A	A	A	A	A		G	G	A	A
ss134810628	ENSMUSSNP1472042	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A											A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30090220					SNP	G	G	A	A	A	G	A	A	A	A	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46913123	NES10828257	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37726042 () rs orientation: forward

Symbol	Name	Function Class
Rr374835	regulatory region 374835	827 bp upstream
Rr406863	regulatory region 406863	7 bp proximal
Rr575537	regulatory region 575537	336 bp proximal
Rr575538	regulatory region 575538	1723 bp proximal
Tssr33054	transcription start site region 33054	526 bp downstream