rs30090561 SNP Detail

Summary

• ID
  rs30090561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84350750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCATCTCA GAAACTGCAA
  GGATCAAAAA CAAAAAACAA AAAAAACAAA AAAAAAAACA AAACAAAACA AAAAAAAACA
  AAACAAAACA AAAAAACCTC CCAGTGCCTT CAGGAGCCAG AGACCTAAAT GGGTTAAGAG
  ATCAGTGAGA GTGAGTGGGT GGGAGCCATG GACTCTAGAG GCGACAGTTT GCTACAAGCT
  Y
  TGTTTCCCCA GCTCCCAGCA TTCCCAGCAC TGTGGCCAAT TGTTACGTCC CAAGTGGAAA
  GATTTGAAAG TACTTCAAAC CTTACACCAA CGCCATGAAG TAAGTAGGTG TCGCCGGCTT
  CACATCCATT TGTTAAGTGG GGAGACCCAG GCATAGAATA CAAGAAGTGT TTCCACGGGC
  AGACAGATTG GTAGGGGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47912013	NES11942576	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T		T	T
ss323369355	CHEV_10_83977631	CHEVERUD	SCREENING_POP	f	SNP											T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30090561					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912013	NES11942576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84350750 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	66 bp upstream
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	350 bp distal
Rr217062	regulatory region 217062	251 bp proximal
Rr229121	regulatory region 229121	523 bp proximal
Rr230499	regulatory region 230499	382 bp distal
Tssr94890	transcription start site region 94890	1824 bp upstream