rs30090563 SNP Detail

Summary

• ID
  rs30090563
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:84350809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAAAC AAAAAAAAAC
  AAAACAAAAC AAAAAAACCT CCCAGTGCCT TCAGGAGCCA GAGACCTAAA TGGGTTAAGA
  GATCAGTGAG AGTGAGTGGG TGGGAGCCAT GGACTCTAGA GGCGACAGTT TGCTACAAGC
  TTTGTTTCCC CAGCTCCCAG CATTCCCAGC ACTGTGGCCA ATTGTTACGT CCCAAGTGGA
  R
  AGATTTGAAA GTACTTCAAA CCTTACACCA ACGCCATGAA GTAAGTAGGT GTCGCCGGCT
  TCACATCCAT TTGTTAAGTG GGGAGACCCA GGCATAGAAT ACAAGAAGTG TTTCCACGGG
  CAGACAGATT GGTAGGGGTG TGGCTGGAGT TTGAACACAG AACCCAATTT CCTAACTGCC
  AATATGGGGT ACACAGGATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss47912015	NES11942577	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A		A	A
ss323369359	CHEV_10_83977690	CHEVERUD	SCREENING_POP	f	SNP										A			G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30090563					SNP	A	A	A	A	G	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912015	NES11942577	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:84350809 () rs orientation: forward

Symbol	Name	Function Class
E230014E18Rik	RIKEN cDNA E230014E18 gene	7 bp upstream
Gm34405	predicted gene, 34405	within coordinates
Rr217061	regulatory region 217061	409 bp distal
Rr217062	regulatory region 217062	192 bp proximal
Rr229121	regulatory region 229121	464 bp proximal
Rr230499	regulatory region 230499	441 bp distal
Tssr94890	transcription start site region 94890	1765 bp upstream