rs30090886 SNP Detail

Summary

• ID
  rs30090886
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86578019 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGTG CGAGGGGGCG GGGGCGGGGC
  K
  CCGGCCAGGC TGGTGAACGC CAAGC                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss46373329	mCV23664595	ABI	CRAMUS_MOUSE	f	SNP	G	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30090886					SNP	G	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86578019 () rs orientation: forward

Symbol	Name	Function Class
A330041J22Rik	RIKEN cDNA A330041J22 gene	within coordinates
Cpgi22104	CpG island 22104	within coordinates
Me1	malic enzyme 1, NADP(+)-dependent, cytosolic	52 bp upstream
Rr205233	regulatory region 205233	1017 bp proximal
Rr206830	regulatory region 206830	within coordinates
Tssr90786	transcription start site region 90786	310 bp upstream
Tssr90787	transcription start site region 90787	288 bp upstream
Tssr90788	transcription start site region 90788	177 bp upstream
Tssr90789	transcription start site region 90789	112 bp upstream
Tssr90790	transcription start site region 90790	8 bp upstream