rs30092024 SNP Detail

Summary

• ID
  rs30092024
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44218257 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCACACTGT GCCTCCTTTT
  ACTTCCCATG TGTCCACTTG TTTTCCCCTG AAAGTCTCCC CTTCCCACTT CCCATTACGT
  AACTAGCCAT TCTTGTGTTT TCAATGGAGA CGGTCCTTTG CCTGAGAATT GACTCTTCTT
  ATTATGATAT ATTGTATTTG TGCTTACTAC TGTGCAGTCT ACACTACCCA GTGAGAAAGA
  M
  CAGTTGCGCC TATTTCTTCG TTTTTATAAA CCAGTCACAG TCACACAATC CAGTGAAGGA
  AATTCAGAAT TTAAAATTGC CATGCTCAAG CCAGGCGTGG TAGTGCATGC CTTTAATCCC
  AGCACTCGAG GGGCAGAGGC AGTCGGATTT CTGAGTTCGA GGCCAGCCTG GTCTATAAAG
  TGAGTTCCAG GACAGCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46372679	mCV23033154	ABI	CRAMUS_MOUSE	f	SNP		A	C					C		C
ss47687458	NES11335275	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	C	C		A	C	C	C		C	C	A		C
ss322940621	CHEV_9_44115043	CHEVERUD	SCREENING_POP	f	SNP													C				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30092024					SNP	A	A	C	C	C	C	C	C	A	C	C	C	C	C	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687458	NES11335275	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44218257 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	886 bp distal
Hinfp	histone H4 transcription factor	1289 bp upstream
Rr195005	regulatory region 195005	744 bp proximal
Rr206299	regulatory region 206299	656 bp distal
Rr368726	regulatory region 368726	865 bp downstream
Tssr89139	transcription start site region 89139	1272 bp upstream