rs30092446 SNP Detail

Summary

• ID
  rs30092446
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54968963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGACGTGG ATTCATGGTG
  AGATTTAGCC AATCAGGGCA CCTCGCAGGG GCTCTCAATT AGTGCTGGTG TTTAAGATCA
  TTAGGGACTC CACTCTAGGC TTCAGGAATT GCAGAACTGT GGCAAAGCAG CAGTCAGGAG
  TCAGTTCCAT ATTGTGCTTA CTAGTTGAGG AAAGGTGTGG CCAGTTTCCA GAGCAGGGAT
  R
  GCCCTCTCCT GTAATGCTGG TTGTGTATAC ACACACACAC ACACACACAC ACACACACAC
  ACACACACAC ACACACACAC ACACACAGTA GTCCACCTGT TTACTCAATC TTTCAGGTGA
  ATCCATGAGC TCTCTAACAG CCTTCCAACA CCCCTCCCCA TTCTCCTTTC TGAAATCAGC
  TGGTTTCTGT TGCCTGAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47913226	NES11653327	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30092446					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913226	NES11653327	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54968963 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	461 bp proximal
Ggct	gamma-glutamyl cyclotransferase	within coordinates
Rr366742	regulatory region 366742	1104 bp upstream
Rr630884	regulatory region 630884	658 bp proximal
Rr630885	regulatory region 630885	809 bp proximal
Rr630886	regulatory region 630886	962 bp proximal
Tssr61105	transcription start site region 61105	880 bp downstream
Tssr61106	transcription start site region 61106	904 bp downstream
Tssr61107	transcription start site region 61107	932 bp downstream
Tssr61108	transcription start site region 61108	947 bp downstream
Tssr61109	transcription start site region 61109	968 bp downstream