rs30092450 SNP Detail

Summary

• ID
  rs30092450
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54969484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGAGTGC CAGAAGAATA
  CGTATTAAAG AGGAAATGAA CTATGGTCAA GAACACATTT TATCACAGTT AAAAGCTTAT
  TGGGCTACTC TACTGAGGGA ACGAACATTG CTATCAGTAT TGAAGACACG GTTCCAGGTC
  TCAAGGCCAG GACGCTAAGA TCCGAAGGAA AGGACAGGCA GAATTTCACA GAACTGTGGG
  W
  TAGATAAGGT ACGCACAGGA CAGAAAGCAG CTAGTTCTCG ACTAAGAAGC ACCTATTAAA
  GGCATCTTAC GGGATGCTCA TAACCGGTGG AAAAGGGCAG CCAGTGGAGG GTTGCGAACT
  CCGACGGTGG CTAGAGGTTC CCGGCAGGAG TCGCAGCTAG CCCGCTCTCC AGGTCGCCCG
  CACAACGGCA CTGACCTGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47913230	NES11653329	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30092450					SNP	A	A	A	A	A	A	T	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913230	NES11653329	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54969484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	within coordinates
Ggct	gamma-glutamyl cyclotransferase	within coordinates
Rr366742	regulatory region 366742	583 bp upstream
Rr630884	regulatory region 630884	137 bp proximal
Rr630885	regulatory region 630885	288 bp proximal
Rr630886	regulatory region 630886	441 bp proximal
Tssr61105	transcription start site region 61105	359 bp downstream
Tssr61106	transcription start site region 61106	383 bp downstream
Tssr61107	transcription start site region 61107	411 bp downstream
Tssr61108	transcription start site region 61108	426 bp downstream
Tssr61109	transcription start site region 61109	447 bp downstream