rs30093486 SNP Detail

Summary

• ID
  rs30093486
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54971048 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAAATGAG TGTTCTGCCT
  TTCTAGTACC AACTGTATTT TTGAAAACCA AATAGCTGAT GAGGAAGCAA TTCTTTGCTT
  TTTTAAAAAA AAGTATACTG GCTAAATGCA GGAAATGGGG GTACTGGGAT TAGAACATCT
  GTCTCTGGTG CAACCAAACT TCCCGTCAGG AGCATCAGGT CACAGGGATG TTTATAGAGT
  M
  TCAGTTATCC CCCAAGGCTC ACTGCTAGTC ATTGGACAGG AAGACCATGA TTATTTGGGA
  AACCTGACCT CTCTCACCTG ATAGCCAGTC AATCTGGTCA CCAATAAAAG AAGACTATCC
  TGACACAGTC AGAAAGCAAC ATGAAGCTGG GCATTGTGGA CTGCACCTTT AATACCATCA
  CTCGAGAGGC AGAGGCAGGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47913238	NES11653209	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30093486					SNP	C	C	C	C	C	C	A	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913238	NES11653209	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54971048 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	715 bp distal
Ggct	gamma-glutamyl cyclotransferase	1101 bp upstream
Rr366742	regulatory region 366742	952 bp downstream
Rr630884	regulatory region 630884	1406 bp distal
Rr630885	regulatory region 630885	1255 bp distal
Rr630886	regulatory region 630886	623 bp distal
Tssr61105	transcription start site region 61105	1185 bp upstream
Tssr61106	transcription start site region 61106	1156 bp upstream
Tssr61107	transcription start site region 61107	1142 bp upstream
Tssr61108	transcription start site region 61108	1127 bp upstream
Tssr61109	transcription start site region 61109	1106 bp upstream