rs30093488 SNP Detail

Summary

• ID
  rs30093488
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54971382 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCAACATG AAGCTGGGCA
  TTGTGGACTG CACCTTTAAT ACCATCACTC GAGAGGCAGA GGCAGGCAGT TCTCTGTGAG
  TTCAAGGCCA GCCTGGCCTA GAGAGTAAGT TCCAAGATAG CCAGGGCTGT TATACAGAGA
  AACCTTGTTT TGAAAAACAA CAACAACAAT AATAACAACA ACATGAAGCA ACACGAAGCC
  M
  CCACATCTGT GAACTACAAT TTACAAAGGA TTTTTAGCCT CAAAAAAAAA AGCCTTTTAT
  CTTTTATATC ACCCTCTTCC AGAAACCATT CATGTATAAG AACAAATGGC AATAGAAGAA
  AACAGTGAAG AACACCTTGA ACTTATCTCT TACATTGTTG TGATTAAAAA TAAAAGGTAA
  GGCTGGGGCC AGCTACATGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47913240	NES11653165	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	A	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30093488					SNP	C	C	C	C	C	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913240	NES11653165	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54971382 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	1049 bp distal
Ggct	gamma-glutamyl cyclotransferase	1435 bp upstream
Rr366742	regulatory region 366742	1286 bp downstream
Rr630884	regulatory region 630884	1740 bp distal
Rr630885	regulatory region 630885	1589 bp distal
Rr630886	regulatory region 630886	957 bp distal
Tssr61105	transcription start site region 61105	1519 bp upstream
Tssr61106	transcription start site region 61106	1490 bp upstream
Tssr61107	transcription start site region 61107	1476 bp upstream
Tssr61108	transcription start site region 61108	1461 bp upstream
Tssr61109	transcription start site region 61109	1440 bp upstream