rs30093490 SNP Detail

Summary

• ID
  rs30093490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54971475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAC CCTCTTCCAG AAACCATTCA
  Y
  GTATAAGAAC AAATGGCAAT AGAAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss47913242	NES11653167	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C		T	C	C	T		T
ss133206778	ENSMUSSNP1907967	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss321805151	CHEV_6_54944484	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30093490					SNP	C	C	C	C	C	C	T	C	C	C	C	T	C	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47913242	NES11653167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54971475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17470	CpG island 17470	1142 bp distal
Ggct	gamma-glutamyl cyclotransferase	1528 bp upstream
Rr366742	regulatory region 366742	1379 bp downstream
Rr630884	regulatory region 630884	1833 bp distal
Rr630885	regulatory region 630885	1682 bp distal
Rr630886	regulatory region 630886	1050 bp distal
Tssr61105	transcription start site region 61105	1612 bp upstream
Tssr61106	transcription start site region 61106	1583 bp upstream
Tssr61107	transcription start site region 61107	1569 bp upstream
Tssr61108	transcription start site region 61108	1554 bp upstream
Tssr61109	transcription start site region 61109	1533 bp upstream