rs30093916 SNP Detail

Summary

• ID
  rs30093916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:103224153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTAT CTGGTCATCC AGAACCTTTA
  Y
  TTAAAGATGC TACGCATCTC TTTTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46373762	mCV22613360	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C	C
ss136877138	ENSMUSSNP7146070	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30093916					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:103224153 () rs orientation: forward

Symbol	Name	Function Class
Rr198506	regulatory region 198506	1153 bp distal
Rr202394	regulatory region 202394	1991 bp proximal
Rr207098	regulatory region 207098	within coordinates
Topbp1	topoisomerase (DNA) II binding protein 1	within coordinates
Tssr91191	transcription start site region 91191	766 bp downstream