rs30094404 SNP Detail

Summary

• ID
  rs30094404
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51185409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCGGCGC TTATGCAACA
  TACAATCAGT TCAGTCGAAA GAACTGCACT TTAAAAAACT TGTACCTAGA AAATATTCTA
  GAAGCATCAC TAAGGAAGTC AGGAGTCTCC AACTACTTCA AAAACTGACT TGGTCCTGTC
  TTCTCGACAG AAGTCAGAGT ACACTAGACA GGTAATTAGT AAACAGAAAA GAGCCGCCCG
  R
  CAGCCTCGGG GAGACTGGAG TCGCTGGGTT TGCTGGTCAT GAAATTCGTG TGCCCTCTCT
  TGTATTTGCT TGACTTGGAC AAATGAACGT ATTCGTTCAT AGCTTAAAGA TATCTTCAGA
  CAGCTTTTAA AAAACTCGTT TACCTTGAAA CTGGCCTTAC AAATACACAC TGTAACAGGA
  AAGGAAAATA ATGGCCAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598810	NES12914376	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30094404					SNP	G	G	G	G	G	G	G	G	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598810	NES12914376	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51185409 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	within coordinates
Cpgi13132	CpG island 13132	187 bp distal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	1377 bp downstream
Rr397655	regulatory region 397655	1644 bp downstream
Rr576259	regulatory region 576259	1714 bp distal
Rr576260	regulatory region 576260	631 bp distal
Rr576261	regulatory region 576261	within coordinates
Rr576262	regulatory region 576262	498 bp distal
Tssr29048	transcription start site region 29048	1714 bp downstream
Tssr29049	transcription start site region 29049	1125 bp downstream
Tssr33194	transcription start site region 33194	1928 bp upstream
Tssr33195	transcription start site region 33195	682 bp upstream
Tssr33196	transcription start site region 33196	545 bp upstream
Tssr33197	transcription start site region 33197	503 bp upstream