rs30095248 SNP Detail

Summary

• ID
  rs30095248
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTATGAA TACACAAGCA
  CATTTGCATT TTTTCAAGTC TCCATAATCA AACAGTTATA AGCAGAATTT AACTAAGTAT
  AAATACACAG CTTTTATAAT ATATACCTTA AAATAAACTC ATTCTGCTAA TAAAACTATA
  GAAAGACAAT ACTGTATAAA AATTACTTAT AAGTCCTGGC AGAGCAGAGA AACCAAGTAA
  Y
  CCTAACCTTA CCTCTCACCA AATAAAAGCC TGTGTGCTAA GTACTTTCTT TACTTTCTTA
  TATTCTGCCT ACATCCCCAC ACAGCAGACA TTACTGTTCC ATTCACTGAG TGCTGCAGGA
  GCTCAGGCTC CTCGCTTAAA TAACTACAAA AGGGTCAGAA TTTGAACCCA GATACCAAAT
  ATTCTTAACC TCACGCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598795	NES12914391	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30095248					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598795	NES12914391	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186888 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	1084 bp downstream
Cpgi13132	CpG island 13132	1666 bp distal
Elf2	E74-like factor 2	within coordinates
Rr576261	regulatory region 576261	1402 bp distal
Rr576262	regulatory region 576262	1977 bp distal
Tssr33197	transcription start site region 33197	1982 bp upstream