rs30095666 SNP Detail

Summary

• ID
  rs30095666
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46118656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTGCGGT ATACTCTGCT
  CTCTCCTCCT CCTCCTCCTC CTCCCCCCTC CCCTCCCTCC TCCCTCCGCC CGCCCTCCCT
  CCCTCGCGCT CTCTCTCGCG CTCGCTCGCT CGCTCCAGTA TGTAAATGTG TAATAGAAGC
  CAAATATGGA GCAGTTGGCT GCCGCCGCCG CAGCTCAAGG ATCCGACTTC ATGGGGGGGG
  W
  GGGGGGGGGG AGGCACCCTC TGGCAGGCGG CCCGGCGAGC CGCACAGAGC ACGGCGAGCG
  CACGGCGCGG CTGCCGGCCC GCGCCCTTAA CCCTTCTATG CACCCGGGCT GGAGCGGCGC
  TCGCTCCAGG GGAGGCCGGG TTGTCTCTCC GCAACTGTGG CTCCGGATCC CCGACACCGA
  CCGGAGGGGA CTGTGCCTTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39150166	mCV22824110	ABI	CRAMUS_MOUSE	f	SNP	T	A	T
ss148968807	ENSMUSSNP6640472	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30095666					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46118656 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	44 bp upstream
Atxn1	ataxin 1	189 bp upstream
Cpgi5536	CpG island 5536	within coordinates
Gm56575	predicted gene, 56575	99 bp downstream
Rr403752	regulatory region 403752	within coordinates
Rr478835	regulatory region 478835	within coordinates
Rr478836	regulatory region 478836	124 bp proximal
Rr478837	regulatory region 478837	1041 bp proximal
Rr478838	regulatory region 478838	1106 bp proximal
Rr478839	regulatory region 478839	1571 bp proximal
Tssr119584	transcription start site region 119584	31 bp upstream
Tssr119585	transcription start site region 119585	275 bp upstream
Tssr122339	transcription start site region 122339	1461 bp upstream
Tssr122340	transcription start site region 122340	179 bp upstream
Tssr122341	transcription start site region 122341	1099 bp downstream