rs30096144 SNP Detail

Summary

• ID
  rs30096144
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186585 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTCTGA CTTACATTTA
  AGCACCTAGA GAATAGAAGC TACATATATC CTTGCATAAT AATTTATATA CATAACATAT
  GTACAGAGAA AATAATGCAA AAACACTGGA AAACACAATA TCTCTGTACA TTTAGAACAT
  ATGAAAGCAC AATGCCTCTA ATCTTAAGGC AAGTCTACCC TGCCTTAAAA ACAGGCTTTC
  R
  AAAGCCAACA CTTTACTGCG AATAATAAGT AGAATGGCCT GCTACTAGAA TGTATACAGG
  TACAAACTGG CAATATGGCA TTTATCAAGA ATCTAATATA TATCCTTATG AATACACAAG
  CACATTTGCA TTTTTTCAAG TCTCCATAAT CAAACAGTTA TAAGCAGAAT TTAACTAAGT
  ATAAATACAC AGCTTTTATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ
ss49598801	NES12914385	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	MOLF/EiJ	NZW/LacJ
rs30096144					SNP	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598801	NES12914385	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186585 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	781 bp downstream
Cpgi13132	CpG island 13132	1363 bp distal
Elf2	E74-like factor 2	within coordinates
Rr576260	regulatory region 576260	1807 bp distal
Rr576261	regulatory region 576261	1099 bp distal
Rr576262	regulatory region 576262	1674 bp distal
Tssr33195	transcription start site region 33195	1858 bp upstream
Tssr33196	transcription start site region 33196	1721 bp upstream
Tssr33197	transcription start site region 33197	1679 bp upstream