rs30096145 SNP Detail

Summary

• ID
  rs30096145
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186449 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACCAGCTTG AAGTCTGACA
  ACTTAGCTGA CTGCATTTTA GGTATCTCGG AGGCAACGTG TATGTGTATA AGCTTGCGTG
  TGTGTGTGTG TGTGTGTGTG TGTGCTTTGC TGAATGTACA CCCTGATTAT CTGCATCATT
  GTCTGACTTA CATTTAAGCA CCTAGAGAAT AGAAGCTACA TATATCCTTG CATAATAATT
  K
  ATATACATAA CATATGTACA GAGAAAATAA TGCAAAAACA CTGGAAAACA CAATATCTCT
  GTACATTTAG AACATATGAA AGCACAATGC CTCTAATCTT AAGGCAAGTC TACCCTGCCT
  TAAAAACAGG CTTTCGAAAG CCAACACTTT ACTGCGAATA ATAAGTAGAA TGGCCTGCTA
  CTAGAATGTA TACAGGTACA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598802	NES12914384	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096145					SNP	T	T	T	T	T	T	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598802	NES12914384	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186449 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	645 bp downstream
Cpgi13132	CpG island 13132	1227 bp distal
Elf2	E74-like factor 2	within coordinates
Rr576260	regulatory region 576260	1671 bp distal
Rr576261	regulatory region 576261	963 bp distal
Rr576262	regulatory region 576262	1538 bp distal
Tssr33195	transcription start site region 33195	1722 bp upstream
Tssr33196	transcription start site region 33196	1585 bp upstream
Tssr33197	transcription start site region 33197	1543 bp upstream