rs30096146 SNP Detail

Summary

• ID
  rs30096146
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAATTTC TGCTCCAGTA
  GCACATTTTC CATGTATTCT ATTTAGTAAG GAAATGGAAA CCGAAGGGGT GTGTGTGGTG
  TGTAGGTGGT GTGTAGGTGA CAAGTCAATG GCTTAAGGAC AATAAAACAG ATTTCTCAAT
  ATAGGACCAG CTTGAAGTCT GACAACTTAG CTGACTGCAT TTTAGGTATC TCGGAGGCAA
  Y
  GTGTATGTGT ATAAGCTTGC GTGTGTGTGT GTGTGTGTGT GTGTGTGCTT TGCTGAATGT
  ACACCCTGAT TATCTGCATC ATTGTCTGAC TTACATTTAA GCACCTAGAG AATAGAAGCT
  ACATATATCC TTGCATAATA ATTTATATAC ATAACATATG TACAGAGAAA ATAATGCAAA
  AACACTGGAA AACACAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598803	NES12914383	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096146					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598803	NES12914383	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186305 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	501 bp downstream
Cpgi13132	CpG island 13132	1083 bp distal
Elf2	E74-like factor 2	within coordinates
Rr576260	regulatory region 576260	1527 bp distal
Rr576261	regulatory region 576261	819 bp distal
Rr576262	regulatory region 576262	1394 bp distal
Tssr33195	transcription start site region 33195	1578 bp upstream
Tssr33196	transcription start site region 33196	1441 bp upstream
Tssr33197	transcription start site region 33197	1399 bp upstream