rs30096147 SNP Detail

Summary

• ID
  rs30096147
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACAGGCAG CATCTTTTAA
  CAGTTTCTGT ATCAAGAAAG ATAAGGAATG CCAAAGGGTA ATTGGATGGC TGTAGGCAGA
  TCAATGAAAC CGATAACAAA TCAGAATTTC TGCTCCAGTA GCACATTTTC CATGTATTCT
  ATTTAGTAAG GAAATGGAAA CCGAAGGGGT GTGTGTGGTG TGTAGGTGGT GTGTAGGTGA
  Y
  AAGTCAATGG CTTAAGGACA ATAAAACAGA TTTCTCAATA TAGGACCAGC TTGAAGTCTG
  ACAACTTAGC TGACTGCATT TTAGGTATCT CGGAGGCAAC GTGTATGTGT ATAAGCTTGC
  GTGTGTGTGT GTGTGTGTGT GTGTGTGCTT TGCTGAATGT ACACCCTGAT TATCTGCATC
  ATTGTCTGAC TTACATTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598804	NES12914382	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096147					SNP	C	C	C	C	C	C	C	C	C	C	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598804	NES12914382	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186205 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930577N17Rik	RIKEN cDNA 4930577N17 gene			401 bp downstream
Cpgi13132	CpG island 13132			983 bp distal
Elf2	E74-like factor 2			Intron
				Noncoding-Transcript-Variant
Rr576260	regulatory region 576260			1427 bp distal
Rr576261	regulatory region 576261			719 bp distal
Rr576262	regulatory region 576262			1294 bp distal
Tssr29049	transcription start site region 29049			1921 bp downstream
Tssr33195	transcription start site region 33195			1478 bp upstream
Tssr33196	transcription start site region 33196			1341 bp upstream
Tssr33197	transcription start site region 33197			1299 bp upstream