rs30096148 SNP Detail

Summary

• ID
  rs30096148
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATAGGTC AAAAGGAGTC
  AGCTAACTGA TAGCTTTTAT TTTTTTCTAC TATCATTTTG AAATAAGAAT CTCCCATTGA
  CAGGCAGCAT CTTTTAACAG TTTCTGTATC AAGAAAGATA AGGAATGCCA AAGGGTAATT
  GGATGGCTGT AGGCAGATCA ATGAAACCGA TAACAAATCA GAATTTCTGC TCCAGTAGCA
  Y
  ATTTTCCATG TATTCTATTT AGTAAGGAAA TGGAAACCGA AGGGGTGTGT GTGGTGTGTA
  GGTGGTGTGT AGGTGACAAG TCAATGGCTT AAGGACAATA AAACAGATTT CTCAATATAG
  GACCAGCTTG AAGTCTGACA ACTTAGCTGA CTGCATTTTA GGTATCTCGG AGGCAACGTG
  TATGTGTATA AGCTTGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598805	NES12914381	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096148					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598805	NES12914381	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186128 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	324 bp downstream
Cpgi13132	CpG island 13132	906 bp distal
Elf2	E74-like factor 2	within coordinates
Rr576260	regulatory region 576260	1350 bp distal
Rr576261	regulatory region 576261	642 bp distal
Rr576262	regulatory region 576262	1217 bp distal
Tssr29049	transcription start site region 29049	1844 bp downstream
Tssr33195	transcription start site region 33195	1401 bp upstream
Tssr33196	transcription start site region 33196	1264 bp upstream
Tssr33197	transcription start site region 33197	1222 bp upstream