rs30096149 SNP Detail

Summary

• ID
  rs30096149
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51186012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAAAT AAGAATCTCC CATTGACAGG
  M
  AGCATCTTTT AACAGTTTCT GTATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45527117	mCV22575156	ABI	CRAMUS_MOUSE	f	SNP	A	A	C					C		C
ss49598806	NES12914380	PERLEGEN	MM_PANEL2	f	SNP	A		C	C	C	A	A		C	C	A	C		C	C	C	C		A
ss135172566	ENSMUSSNP2544942	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C							C
ss320762242	CHEV_3_51082513	CHEVERUD	SCREENING_POP	f	SNP													C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30096149					SNP	A	A	C	C	C	A	A	C	C	C	A	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598806	NES12914380	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51186012 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	208 bp downstream
Cpgi13132	CpG island 13132	790 bp distal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	1980 bp downstream
Rr576260	regulatory region 576260	1234 bp distal
Rr576261	regulatory region 576261	526 bp distal
Rr576262	regulatory region 576262	1101 bp distal
Tssr29049	transcription start site region 29049	1728 bp downstream
Tssr33195	transcription start site region 33195	1285 bp upstream
Tssr33196	transcription start site region 33196	1148 bp upstream
Tssr33197	transcription start site region 33197	1106 bp upstream