rs30096150 SNP Detail

Summary

• ID
  rs30096150
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51185936 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATGCAC CTCCAATACA
  TTTTATTCTT CGTTCAATAA AAGTTGCTGA ATAAAAAGTA ATCATCTGTA ATGGTAGGGT
  TACAGATTTT ATCTCAATTA ACTGCATATA AATAAAGTTT GACAGTAATA TAACGCGATA
  TGGTTTTATA AGTTTACCCA GCACCATTAG ATGGGTTTAC CTAAGACTGC CAAGCATAGG
  W
  CAAAAGGAGT CAGCTAACTG ATAGCTTTTA TTTTTTTCTA CTATCATTTT GAAATAAGAA
  TCTCCCATTG ACAGGCAGCA TCTTTTAACA GTTTCTGTAT CAAGAAAGAT AAGGAATGCC
  AAAGGGTAAT TGGATGGCTG TAGGCAGATC AATGAAACCG ATAACAAATC AGAATTTCTG
  CTCCAGTAGC ACATTTTCCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49598807	NES12914379	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096150					SNP	T	T	T	T	T	T	T	T	T	T	T	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49598807	NES12914379	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51185936 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	132 bp downstream
Cpgi13132	CpG island 13132	714 bp distal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	1904 bp downstream
Rr576260	regulatory region 576260	1158 bp distal
Rr576261	regulatory region 576261	450 bp distal
Rr576262	regulatory region 576262	1025 bp distal
Tssr29049	transcription start site region 29049	1652 bp downstream
Tssr33195	transcription start site region 33195	1209 bp upstream
Tssr33196	transcription start site region 33196	1072 bp upstream
Tssr33197	transcription start site region 33197	1030 bp upstream