rs30096269 SNP Detail

Summary

• ID
  rs30096269
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:36928819 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGGAGACT CAGACAGATA
  GCAATCCACT GTTGTGATTC CTTTGCTGTG TACATTAAAT AGTTAGCAGC ATAACATAAT
  AATAGCTCAT AGTTTCTGTG GGCAAGGAAT TGAGGGGTGG TCACCTTGGA GGTTCTGGAC
  CTGGGTCTCT AATAAAGCCG CAGTTGTGGA ATTGACTAGG TTTGCATTCG TTGGGGCTTA
  R
  ATAAAGTTAG AAGGTCCTCT TCCAGGCCCT CCCGTGCCTG TGGTTCGGAG GCTCAAGTTT
  ATTCTCTGGG CCTGCTTGTA AGGTCATTCA CAATGAAGTG TAAAGAGGGA CTTTCCCTAA
  AGCAAGTCAT GTGAAGTTTG TCTGTTTTGT TAATTGAGAC ATTAATTAGA CATCATCTAA
  TTTTACCTAG AGATTTGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39646436	mCV23084273	ABI	CRAMUS_MOUSE	f	SNP	A	G	A	A
ss146951517	ENSMUSSNP2416794	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30096269					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36928819 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9878	CpG island 9878	1447 bp distal
Rr405606	regulatory region 405606	1784 bp downstream
Rr536210	regulatory region 536210	1880 bp distal
Tssr150673	transcription start site region 150673	1917 bp downstream
Tssr150674	transcription start site region 150674	1829 bp downstream
Tssr150675	transcription start site region 150675	638 bp downstream
Tssr150676	transcription start site region 150676	263 bp upstream
Tssr150677	transcription start site region 150677	294 bp upstream
Tssr150678	transcription start site region 150678	754 bp upstream
Zmat2	zinc finger, matrin type 2	Intron