rs30096742 SNP Detail

Summary

• ID
  rs30096742
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54851830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACTTTACA TTTTGAAAAA
  CTGAGCAATT TTTGAGACGT TCTAACTCAG TTGCTTACAT ATCTCATTTG AACATTGAGT
  AACTGGAGTA TTAAAGCTGA CTTCAAATTG TTTGATCAGA TGAGAGTTCT GCAGGAAACC
  CTTGCCAGCA GAGCTTGATC TTTGGCTTTA AGCTGCTGTT TGGGGTGTTT GTGTGTGGGT
  R
  TACTTGTCTT GATACTGAAA ATATAGTTGT CATTGTACTG AAGCTAAAAG GAATTTAAAA
  TCAGAATAAC TGCCTTAAAT CCAGCATTCT GAATTAAGAT AGGGCAGTTT TGTTTTGTTT
  TTTAAACTAA ACTTCAAAGT GTTTGAGGTT CATACTCACC TATCAAGTTT AAAATATTAT
  ATAGAATTCT TAAAATACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47912492	NES11661115	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30096742					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912492	NES11661115	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54851830 () rs orientation: forward

Symbol	Name	Function Class
Rr140764	regulatory region 140764	1430 bp distal
Rr149914	regulatory region 149914	1971 bp proximal
Znrf2	zinc and ring finger 2	within coordinates