rs30098058 SNP Detail

Summary

• ID
  rs30098058
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59075004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATCGTTCCCC ATCTATACAG CTTTGCATTT TATAATAAAT
  AAAATTGTTT ATTTGTATTC ATTTATAATA TACACAATAC ATTATCTAAC ATATTTATAA
  Y
  ATATTATGTT CTATATTAAT TATATATTAC ACATTACATA TTATATAGTT ATATGTAATA
  TTATAATAAG TGTGTCAGGG TGACAGTGTC TGTCTGTAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39150359	mCV22575933	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	T	C
ss149068321	ENSMUSSNP93391	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		C
ss324355427	CHEV_13_59028551	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30098058					SNP	T	T	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59075004 () rs orientation: forward

Symbol	Name	Function Class
Ntrk2	neurotrophic tyrosine kinase, receptor, type 2	within coordinates
Rr273008	regulatory region 273008	397 bp proximal
Rr284484	regulatory region 284484	490 bp proximal