rs30099447 SNP Detail

Summary

• ID
  rs30099447
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54911223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCACAGGA AGGGAGGGCC
  CCCTCTGTCC TAGAGTCATT TGAGAAAGAG GAAGGAACGG GAACCTGCCT GCCAGTGTCC
  CTTCCGTTTT ATCTGGGCTT GAATATTGCT CCTAGCCTCT GCCCCTACAA AGGGTGCCAC
  ATGGAGAAAC TGAGGGGCTT CAGGTGTCCC GTGTCATCCT GTTGTTCACT GGGCACTTAA
  R
  AATAATGCAC TTGACCAAAA ACTCACACCC ACTGAGGAAA ACTTCAGCAA GAGAAGCCAA
  GTGCCAATCA ATGTTGCCCT AGTAGAAAAG ACAGGCACCC CCTCCCAACA GTTCCTCCCC
  AGGTCCCTGG AGCCCATATC TCAGAAGGCA CGTTACCTGA GAGTGGTCAG GCTGGGGTGG
  TCCTTCAATG CCTCTGCGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47912908	NES11657213	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30099447					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912908	NES11657213	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54911223 () rs orientation: forward

Symbol	Name	Function Class
Nod1	nucleotide-binding oligomerization domain containing 1	within coordinates
Tssr61097	transcription start site region 61097	221 bp downstream