rs30099451 SNP Detail

Summary

• ID
  rs30099451
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54911544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTCCCTGG AGCCCATATC
  TCAGAAGGCA CGTTACCTGA GAGTGGTCAG GCTGGGGTGG TCCTTCAATG CCTCTGCGAA
  GGCCTTTGCC CCTTCGTCTC CAATCTGATT ACCCCACATC CTGAAAGCAG AGGTAAGAAA
  AGGACTGTTC CGCGGCCACA CCTCCAGCTG ATGACAGCTG CCCTCTTGGT TCATTCTCAA
  Y
  AGGCAACTCC CAGAGCAGTT ACCTCAGGCC CAGCCTGCAG CTGCCTAAGA AGCCAGCCCT
  GGGCTACAGT TACAGAGAGC TGTGAAAACA GCAACAGCCT TAAGTCCAGA GAGGCAGATC
  AGCAGGTTGC GCAGCTCGCA GCTCGAGACC AGCCTCTCTG AACTTTGAGA AGGCTCCAGT
  GGGAGACACT CAGCCAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47912912	NES11657215	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30099451					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912912	NES11657215	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54911544 () rs orientation: forward

Symbol	Name	Function Class
Nod1	nucleotide-binding oligomerization domain containing 1	within coordinates
Tssr61097	transcription start site region 61097	84 bp upstream