rs30099453 SNP Detail

Summary

• ID
  rs30099453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54911674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTAAGAAA AGGACTGTTC
  CGCGGCCACA CCTCCAGCTG ATGACAGCTG CCCTCTTGGT TCATTCTCAA TAGGCAACTC
  CCAGAGCAGT TACCTCAGGC CCAGCCTGCA GCTGCCTAAG AAGCCAGCCC TGGGCTACAG
  TTACAGAGAG CTGTGAAAAC AGCAACAGCC TTAAGTCCAG AGAGGCAGAT CAGCAGGTTG
  Y
  GCAGCTCGCA GCTCGAGACC AGCCTCTCTG AACTTTGAGA AGGCTCCAGT GGGAGACACT
  CAGCCAGCAA CTGCCCTAGA AAGAAAATCC CAGGCCACTC TGAAGAGCTG TGCACAGGAG
  TTAGATGTTC ACCCTGGATC AACTGAGGTA GCAAACGGAT GGCCACTGGA GATGATTTTG
  GCCTCCCAGG AAGCCAAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47912914	NES11657216	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30099453					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912914	NES11657216	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54911674 () rs orientation: forward

Symbol	Name	Function Class
Nod1	nucleotide-binding oligomerization domain containing 1	within coordinates
Rr140770	regulatory region 140770	527 bp proximal
Rr140771	regulatory region 140771	1527 bp proximal
Rr149917	regulatory region 149917	1874 bp distal
Rr149918	regulatory region 149918	within coordinates
Tssr61097	transcription start site region 61097	214 bp upstream