rs30100275 SNP Detail

Summary

• ID
  rs30100275
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54912016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAGGTAG CAAACGGATG
  GCCACTGGAG ATGATTTTGG CCTCCCAGGA AGCCAAGAAC TGGAGCTGTG GCTGAAACCT
  CACCAGCAAC CTTACTTGTA TGTGGCAAGA ATGTTGCCAA CCAGGGCCTG AGTTCCACTT
  CAGTCTCGGT GGATAATTAG AACACTGAAG CTGATCTCCC TGGCCAGGCA GACCTCTCAG
  M
  GGGCAAAATA AACAATCTGC CTAGTGAAAG TCTCACATCG AGCTCTGCCT CTGGGAAGAG
  AAATCTCAGT GGAGAACCCG CCTCCATCAG ATGGACCTAT AGGAAACTCT GTAAGGCTGG
  AGAACCCGCC TTCATCAGAT GGACCTATAG GAAACTCTGT AGGGTGTGTT CTTGAGGTAT
  GTAAGAAGGC AGGCCGGAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47912916	NES11657217	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30100275					SNP	A	A	A	A	A	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47912916	NES11657217	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54912016 () rs orientation: forward

Symbol	Name	Function Class
Nod1	nucleotide-binding oligomerization domain containing 1	within coordinates
Rr140770	regulatory region 140770	185 bp proximal
Rr140771	regulatory region 140771	1185 bp proximal
Rr149918	regulatory region 149918	17 bp distal
Tssr61097	transcription start site region 61097	556 bp upstream