rs30101032 SNP Detail

Summary

• ID
  rs30101032
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATAGATCA AGCTAGTTAG
  ATCAGTGGTT ACATTTAAAA ATTTATCTAA ACTTAAGTTG TTTGGATTCC TCTCTTTCTT
  GTCGTTTCTC TCACTTCCTT CATCTCACTC CCTGAGAATG CTTTTTATCT CTCCTAACCA
  AAAGCTACAC ATTACCGAAA AATTTGAACC TCATGTAAGC GTGCAAGGCA TAATGAAATC
  R
  ATTGCTGAGG ACAGTGTGGC TTTAAAGTGT TAGCTCCTTG TTTCGAACAT TGTCAATATT
  TTGGCATTGC TCATAGGGAG TATTGCTGCT TCTCATGATT CCATGAGTGA AATTGTCACA
  TGAATTATAT GTCTTGTTGT GTGACATTTA AATTAAAAAT GAAGGTGATG TGTATTCAGA
  AGAAGTTATT CATGCTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49101720	NES12439500	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G	G	G	G		G	G	A	G		A
ss148902929	ENSMUSSNP6091096	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G					G
ss324322205	CHEV_13_39161404	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30101032					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49101720	NES12439500	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253511 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	within coordinates