rs30101819 SNP Detail

Summary

• ID
  rs30101819
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59252407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGGGCGG GGCAGAGGGG
  GCTGGGGCTG GTAGTGGTGC CAAATATGCT GACAGCATGT GATATACTTG AATAAAAAAA
  CATGTCATAG ACCCCGTAAG TCTTCACAAT GAATATATGC TAATGATGGT GGTAACAACA
  ACAGCAATAA CATTCAAAGA CGCTTCAATC ACTGTGGTTT GTCCTGGGTT TGTGACTCCC
  Y
  TTCTGTTTGC AAGTTGAGAT AGCAGTGAAG TGAGGTGTCT GACTTTCTTT TTTTTTTTTT
  TTTTTTTTTT TTTTCCATTT TTTATTAGGT ATTTAACTCA TTTACATTTC CAATGCTATA
  CCAAAAGTCC CCCATATCCA CCCACCCCCA CTCCCCTGCC CACCCACTCC CCCTTTTTGG
  CCCTGGTATT CCCCTGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600525	NES12904060	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30101819					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600525	NES12904060	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59252407 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13208	CpG island 13208	476 bp distal
Gm38186	predicted gene, 38186	within coordinates
Igsf10	immunoglobulin superfamily, member 10	mRNA-UTR
Rr577348	regulatory region 577348	838 bp distal
Rr577349	regulatory region 577349	718 bp distal
Rr577350	regulatory region 577350	603 bp distal
Rr577351	regulatory region 577351	102 bp distal
Tssr33412	transcription start site region 33412	995 bp upstream
Tssr33413	transcription start site region 33413	940 bp upstream
Tssr33414	transcription start site region 33414	910 bp upstream
Tssr33415	transcription start site region 33415	886 bp upstream
Tssr33416	transcription start site region 33416	821 bp upstream
Tssr33417	transcription start site region 33417	619 bp upstream
Tssr33418	transcription start site region 33418	564 bp upstream
Tssr33419	transcription start site region 33419	537 bp upstream