rs30101820 SNP Detail

Summary

• ID
  rs30101820
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59252367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TTGGGGGCGG GGCAGAGGGG GCTGGGGCTG GTAGTGGTGC
  CAAATATGCT GACAGCATGT GATATACTTG AATAAAAAAA CATGTCATAG ACCCCGTAAG
  TCTTCACAAT GAATATATGC TAATGATGGT GGTAACAACA ACAGCAATAA CATTCAAAGA
  Y
  GCTTCAATCA CTGTGGTTTG TCCTGGGTTT GTGACTCCCC TTCTGTTTGC AAGTTGAGAT
  AGCAGTGAAG TGAGGTGTCT GACTTTCTTT TTTTTTTTTT TTTTTTTTTT TTTTCCATTT
  TTTATTAGGT ATTTAACTCA TTTACATTTC CAATGCTATA CCAAAAGTCC CCCATATCCA
  CCCACCCCCA CTCCCCTGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600526	NES12904058	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30101820					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600526	NES12904058	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59252367 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13208	CpG island 13208	436 bp distal
Gm38186	predicted gene, 38186	within coordinates
Igsf10	immunoglobulin superfamily, member 10	mRNA-UTR
Rr577348	regulatory region 577348	798 bp distal
Rr577349	regulatory region 577349	678 bp distal
Rr577350	regulatory region 577350	563 bp distal
Rr577351	regulatory region 577351	62 bp distal
Tssr33412	transcription start site region 33412	955 bp upstream
Tssr33413	transcription start site region 33413	900 bp upstream
Tssr33414	transcription start site region 33414	870 bp upstream
Tssr33415	transcription start site region 33415	846 bp upstream
Tssr33416	transcription start site region 33416	781 bp upstream
Tssr33417	transcription start site region 33417	579 bp upstream
Tssr33418	transcription start site region 33418	524 bp upstream
Tssr33419	transcription start site region 33419	497 bp upstream